IL_1NJN_011

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAAG*CGAACG

Length

10 nucleotides

Bulged bases

1NJN|1|0|C|358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJN_011 not in the Motif Atlas

Homologous match to IL_7A0S_008

Geometric discrepancy: 0.586

The information below is about IL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05192.8

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

1NJN|1|0|C|303
1NJN|1|0|A|304
1NJN|1|0|A|305
1NJN|1|0|G|306
*
1NJN|1|0|C|354
1NJN|1|0|G|355
1NJN|1|0|A|356
1NJN|1|0|A|357
1NJN|1|0|C|358
1NJN|1|0|G|359

Current chains

Chain 0

23S ribosomal RNA

Nearby chains