IL_1NJN_025

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUAU*GUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJN_025 not in the Motif Atlas

Geometric match to IL_5LQO_002

Geometric discrepancy: 0.2543

The information below is about IL_5LQO_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

1NJN|1|0|G|836
1NJN|1|0|U|837
1NJN|1|0|A|838
1NJN|1|0|U|839
*
1NJN|1|0|G|844
1NJN|1|0|U|845
1NJN|1|0|A|846
1NJN|1|0|C|847

Current chains

Chain 0

23S ribosomal RNA

Nearby chains