IL_1NJN_117

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UCUCC*GGUAG

Length

10 nucleotides

Bulged bases

1NJN|1|0|U|2668, 1NJN|1|0|C|2669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJN_117 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.2656

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

1NJN|1|0|U|2666
1NJN|1|0|C|2667
1NJN|1|0|U|2668
1NJN|1|0|C|2669
1NJN|1|0|C|2670
*
1NJN|1|0|G|2698
1NJN|1|0|G|2699
1NJN|1|0|U|2700
1NJN|1|0|A|2701
1NJN|1|0|G|2702

Current chains

Chain 0

23S ribosomal RNA

Nearby chains