Motif IL_08296.3 Version IL_08296.3 of this group appears in releases 3.54 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-3 | 4-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_096 | 7A0S | 0.0000 | 2 | UAA/GAN related, with intercalation | X | LSU rRNA | G | 2698 | G | 2699 | U | 2700 | A | 2701 | G | 2702 | * | U | 2666 | C | 2667 | C | 2670 | cWW | ncSH | ntHS | cWW |
| 2 | IL_4WF9_102 | 4WF9 | 0.1533 | 2 | UAA/GAN related, with intercalation | X | LSU rRNA | G | 2745 | G | 2746 | U | 2747 | A | 2748 | G | 2749 | * | U | 2714 | G | 2715 | C | 2718 | cWW | tHS | cWW | |
| 3 | IL_7RQB_105 | 7RQB | 0.1670 | 2 | 1A | LSU rRNA | G | 2718 | G | 2719 | U | 2720 | A | 2721 | G | 2722 | * | U | 2687 | U | 2688 | C | 2691 | cWW | tHS | cWW | ||
| 4 | IL_5J7L_348 | 5J7L | 0.1757 | 2 | UAA/GAN related, with intercalation | DA | LSU rRNA | G | 2718 | G | 2719 | U | 2720 | A | 2721 | G | 2722 | * | U | 2687 | G | 2688 | C | 2691 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAG*UCUCC | 1 |
| GGUAG*UGUAC | 1 |
| GGUAG*UUUCC | 1 |
| GGUAG*UGUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA*CUC | 1 |
| GUA*GUA | 1 |
| GUA*UUC | 1 |
| GUA*GUU | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- UAA/GAN related, with intercalation (3)
- (1)
- Basepair signature
- cWW-L-tHS-L-cWW
- Heat map statistics
- Min 0.10 | Avg 0.10 | Max 0.18
Coloring options: