IL_1NJO_009

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_009 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.2701

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

1NJO|1|0|G|215
1NJO|1|0|U|216
1NJO|1|0|U|217
1NJO|1|0|A|218
1NJO|1|0|G|219
1NJO|1|0|U|220
1NJO|1|0|A|221
1NJO|1|0|G|222
*
1NJO|1|0|C|230
1NJO|1|0|G|231
1NJO|1|0|A|232
1NJO|1|0|A|233
1NJO|1|0|C|234
1NJO|1|0|C|235
1NJO|1|0|C|236

Current chains

Chain 0

23S ribosomal RNA

Nearby chains