IL_1NJO_072

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

ACUUUG*CUGU

Length

10 nucleotides

Bulged bases

1NJO|1|0|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_072 not in the Motif Atlas

Homologous match to IL_7RQB_067

Geometric discrepancy: 0.3484

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

1NJO|1|0|A|1686
1NJO|1|0|C|1687
1NJO|1|0|U|1688
1NJO|1|0|U|1689
1NJO|1|0|U|1690
1NJO|1|0|G|1691
*
1NJO|1|0|C|1973
1NJO|1|0|U|1974
1NJO|1|0|G|1975
1NJO|1|0|U|1976

Current chains

Chain 0

23S ribosomal RNA

Nearby chains