IL_1NJO_077

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

1NJO|1|0|C|1830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_077 not in the Motif Atlas

Homologous match to IL_5J7L_314

Geometric discrepancy: 0.2969

The information below is about IL_5J7L_314

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

1NJO|1|0|C|1829
1NJO|1|0|C|1830
1NJO|1|0|G|1831
1NJO|1|0|G|1832
*
1NJO|1|0|C|1885
1NJO|1|0|G|1886

Current chains

Chain 0

23S ribosomal RNA

Nearby chains