Motif IL_95583.2 Version IL_95583.2 of this group appears in releases 3.96 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3RW6_003 | 3RW6 | 0.7181 | 1 | Minor groove platform | H | constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA | U | 38 | A | 40 | U | 41 | * | A | 20 | G | 21 | cWW | tHS | cWW |
| 2 | IL_5J7L_048 | 5J7L | 0.5774 | 2 | Minor groove platform | AA | SSU rRNA | U | 1199 | U | 1202 | C | 1203 | * | G | 1057 | G | 1058 | cWW | tHS | cWW |
| 3 | IL_4LFB_045 | 4LFB | 0.5499 | 2 | Minor groove platform | A | SSU rRNA | U | 1199 | G | 1202 | C | 1203 | * | G | 1057 | G | 1058 | cWW | tHS | cWW |
| 4 | IL_9DFE_073 | 9DFE | 0.3101 | 1 | Minor groove platform | 1A | LSU rRNA | G | 1846 | A | 1848 | G | 1849 | * | C | 1893 | C | 1894 | cWW | ncWS | cWW |
| 5 | IL_1U9S_005 | 1U9S | 0.1387 | 1 | Minor groove platform, major groove intercalation | A | RIBONUCLEASE P | C | 136 | G | 138 | C | 139 | * | G | 161 | G | 162 | cWW | ntHS | cWW |
| 6 | IL_5J7L_314 | 5J7L | 0.0000 | 1 | Minor groove platform, major groove intercalation | DA | LSU rRNA | C | 1837 | G | 1839 | G | 1840 | * | C | 1902 | G | 1903 | cWW | ntHS | cWW |
| 7 | IL_4V9F_066 | 4V9F | 0.1403 | 1 | Minor groove platform, major groove intercalation | 0 | LSU rRNA | C | 1893 | A | 1895 | G | 1896 | * | C | 1943 | G | 1944 | cWW | cWW | |
| 8 | IL_9DFE_071 | 9DFE | 0.1297 | 1 | Minor groove platform, major groove intercalation | 1A | LSU rRNA | C | 1837 | G | 1839 | G | 1840 | * | C | 1902 | G | 1903 | cWW | ntHS | cWW |
| 9 | IL_8P9A_312 | 8P9A | 0.1527 | 1 | Minor groove platform, major groove intercalation | AR | LSU rRNA | C | 2196 | A | 2198 | G | 2199 | * | C | 2245 | G | 2246 | cWW | cWW | |
| 10 | IL_8CRE_089 | 8CRE | 0.1594 | 1 | 1 | LSU rRNA | C | 2174 | A | 2176 | G | 2177 | * | C | 2223 | G | 2224 | cWW | cWW | ||
| 11 | IL_7A0S_066 | 7A0S | 0.1712 | 1 | Minor groove platform, major groove intercalation | X | LSU rRNA | C | 1829 | G | 1831 | G | 1832 | * | C | 1885 | G | 1886 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGG*CG | 3 |
| CCAG*CG | 3 |
| UAAU*AG | 1 |
| UCAUC*GG | 1 |
| UCAGC*GG | 1 |
| GAAG*CC | 1 |
| CAGC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CG* | 3 |
| CA* | 3 |
| AA* | 2 |
| CAU* | 1 |
| CAG* | 1 |
| AG* | 1 |
- Annotations
-
- Minor groove platform, major groove intercalation (6)
- Minor groove platform (4)
- (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.09 | Avg 0.36 | Max 0.83
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