IL_1NJO_094

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUUU*AAAC

Length

8 nucleotides

Bulged bases

1NJO|1|0|A|2168

QA status

Self-complementary: GUUU,AAAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_094 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.3103

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

1NJO|1|0|G|2085
1NJO|1|0|U|2086
1NJO|1|0|U|2087
1NJO|1|0|U|2088
*
1NJO|1|0|A|2167
1NJO|1|0|A|2168
1NJO|1|0|A|2169
1NJO|1|0|C|2170

Current chains

Chain 0

23S ribosomal RNA

Nearby chains