IL_1NJO_115

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

1NJO|1|0|U|2759, 1NJO|1|0|G|2760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_115 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.339

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

1NJO|1|0|U|2615
1NJO|1|0|U|2616
1NJO|1|0|G|2617
1NJO|1|0|A|2618
1NJO|1|0|G|2619
*
1NJO|1|0|C|2754
1NJO|1|0|A|2755
1NJO|1|0|A|2756
1NJO|1|0|G|2757
1NJO|1|0|A|2758
1NJO|1|0|U|2759
1NJO|1|0|G|2760
1NJO|1|0|A|2761
1NJO|1|0|G|2762

Current chains

Chain 0

23S ribosomal RNA

Nearby chains