IL_1NJO_117

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_117 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.2977

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1NJO|1|0|C|2631
1NJO|1|0|U|2632
1NJO|1|0|A|2633
1NJO|1|0|G|2634
1NJO|1|0|U|2635
1NJO|1|0|A|2636
1NJO|1|0|C|2637
*
1NJO|1|0|G|2642
1NJO|1|0|G|2643
1NJO|1|0|A|2644
1NJO|1|0|C|2645
1NJO|1|0|C|2646
1NJO|1|0|G|2647

Current chains

Chain 0

23S ribosomal RNA

Nearby chains