IL_1NJO_119

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UCUCC*GGUAG

Length

10 nucleotides

Bulged bases

1NJO|1|0|U|2668, 1NJO|1|0|C|2669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_119 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.2601

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

1NJO|1|0|U|2666
1NJO|1|0|C|2667
1NJO|1|0|U|2668
1NJO|1|0|C|2669
1NJO|1|0|C|2670
*
1NJO|1|0|G|2698
1NJO|1|0|G|2699
1NJO|1|0|U|2700
1NJO|1|0|A|2701
1NJO|1|0|G|2702

Current chains

Chain 0

23S ribosomal RNA

Nearby chains