IL_1NJP_007

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_007 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.2409

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

1NJP|1|0|G|165
1NJP|1|0|G|166
1NJP|1|0|A|167
1NJP|1|0|A|168
1NJP|1|0|C|169
1NJP|1|0|U|170
1NJP|1|0|G|171
*
1NJP|1|0|C|178
1NJP|1|0|U|179
1NJP|1|0|C|180
1NJP|1|0|A|181
1NJP|1|0|G|182
1NJP|1|0|U|183
1NJP|1|0|A|184
1NJP|1|0|C|185

Current chains

Chain 0

23S ribosomal RNA

Nearby chains