IL_1NJP_009

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_009 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.2707

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

1NJP|1|0|G|215
1NJP|1|0|U|216
1NJP|1|0|U|217
1NJP|1|0|A|218
1NJP|1|0|G|219
1NJP|1|0|U|220
1NJP|1|0|A|221
1NJP|1|0|G|222
*
1NJP|1|0|C|230
1NJP|1|0|G|231
1NJP|1|0|A|232
1NJP|1|0|A|233
1NJP|1|0|C|234
1NJP|1|0|C|235
1NJP|1|0|C|236

Current chains

Chain 0

23S ribosomal RNA

Nearby chains