IL_1NJP_018

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

1NJP|1|0|G|814, 1NJP|1|0|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_018 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.3544

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

1NJP|1|0|G|687
1NJP|1|0|A|688
1NJP|1|0|A|689
1NJP|1|0|A|690
1NJP|1|0|C|691
*
1NJP|1|0|G|812
1NJP|1|0|A|813
1NJP|1|0|G|814
1NJP|1|0|A|815
1NJP|1|0|U|816
1NJP|1|0|A|817
1NJP|1|0|G|818
1NJP|1|0|C|819

Current chains

Chain 0

23S ribosomal RNA

Nearby chains