IL_1NJP_027

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGUU*AG

Length

6 nucleotides

Bulged bases

1NJP|1|0|G|858

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_027 not in the Motif Atlas

Homologous match to IL_7A0S_023

Geometric discrepancy: 0.5788

The information below is about IL_7A0S_023

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

1NJP|1|0|U|857
1NJP|1|0|G|858
1NJP|1|0|U|859
1NJP|1|0|U|860
*
1NJP|1|0|A|944
1NJP|1|0|G|945

Current chains

Chain 0

23S ribosomal RNA

Nearby chains