IL_1NJP_038

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCCCUAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_038 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1203

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

1NJP|1|0|U|1015
1NJP|1|0|C|1016
1NJP|1|0|C|1017
1NJP|1|0|C|1018
1NJP|1|0|U|1019
1NJP|1|0|A|1020
1NJP|1|0|A|1021
1NJP|1|0|A|1022
*
1NJP|1|0|U|1161
1NJP|1|0|A|1162

Current chains

Chain 0

23S ribosomal RNA

Nearby chains