Motif IL_05670.1 Version IL_05670.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6LTU_001 | 6LTU | 0.4772 | 2 | Multiple bulged bases | B | RNA (56-mer) | C | 11 | U | 12 | * | A | 16 | G | 19 | cWW | cWW |
| 2 | IL_3R2D_001 | 3R2D | 0.3238 | 2 | Multiple bulged bases | S+R | RNA (12-mer) | G | 10 | C | 11 | * | G | 2 | C | 5 | cWW | cWW |
| 3 | IL_6JXM_001 | 6JXM | 0.2704 | 2 | Multiple bulged bases | B | tRNA | A | 34 | C | 35 | * | G | 53 | U | 56 | cWW | cWW |
| 4 | IL_1R3E_001 | 1R3E | 0.1440 | 3 | Multiple bulged bases | E+D | RNA (17-mer) | C | 415 | C | 416 | * | G | 408 | G | 412 | cWW | cWW |
| 5 | IL_1R3E_002 | 1R3E | 0.0000 | 3 | Multiple bulged bases | D+E | RNA (17-mer) | C | 415 | C | 416 | * | G | 408 | G | 412 | cWW | cWW |
| 6 | IL_8ZAU_001 | 8ZAU | 0.1994 | 2 | A | RNA (69-MER) | C | 38 | G | 41 | * | C | 11 | G | 12 | cWW | cWW | |
| 7 | IL_7Q80_001 | 7Q80 | 0.1817 | 2 | Multiple bulged bases | C+B | RNA 3 | C | 35 | G | 38 | * | C | 13 | G | 14 | cWW | cWW |
| 8 | IL_7Q80_003 | 7Q80 | 0.1832 | 2 | Multiple bulged bases | F+E | RNA 3 | C | 35 | G | 38 | * | C | 13 | G | 14 | cWW | cWW |
| 9 | IL_8GLP_035 | 8GLP | 0.2875 | 2 | L5 | LSU rRNA | G | 942 | U | 945 | * | A | 723 | C | 724 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAG*CG | 3 |
| CC*GUUCG | 2 |
| CU*AUUG | 1 |
| GC*GCUC | 1 |
| AC*GAUU | 1 |
| GAAU*AC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA* | 3 |
| *UUC | 2 |
| *UU | 1 |
| *CU | 1 |
| *AU | 1 |
| AA* | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Multiple bulged bases (7)
- (2)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.29 | Max 0.67
Coloring options: