IL_1NJP_051

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

1NJP|1|0|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_051 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.2743

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

1NJP|1|0|C|1221
1NJP|1|0|G|1222
1NJP|1|0|G|1223
1NJP|1|0|A|1224
1NJP|1|0|G|1225
1NJP|1|0|A|1226
1NJP|1|0|A|1227
1NJP|1|0|G|1228
*
1NJP|1|0|U|1247
1NJP|1|0|G|1248
1NJP|1|0|G|1249
1NJP|1|0|A|1250
1NJP|1|0|G|1251

Current chains

Chain 0

23S ribosomal RNA

Nearby chains