IL_1NJP_052

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUAC*GAGU

Length

8 nucleotides

Bulged bases

1NJP|1|0|A|1233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_052 not in the Motif Atlas

Geometric match to IL_2O3V_003

Geometric discrepancy: 0.3951

The information below is about IL_2O3V_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34618.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

6

Unit IDs

1NJP|1|0|A|1231
1NJP|1|0|U|1232
1NJP|1|0|A|1233
1NJP|1|0|C|1234
*
1NJP|1|0|G|1241
1NJP|1|0|A|1242
1NJP|1|0|G|1243
1NJP|1|0|U|1244

Current chains

Chain 0

23S ribosomal RNA

Nearby chains