IL_1NJP_055

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_055 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.3596

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

1NJP|1|0|C|1364
1NJP|1|0|U|1365
1NJP|1|0|A|1366
1NJP|1|0|A|1367
1NJP|1|0|G|1368
*
1NJP|1|0|C|1389
1NJP|1|0|G|1390
1NJP|1|0|A|1391
1NJP|1|0|U|1392
1NJP|1|0|G|1393

Current chains

Chain 0

23S ribosomal RNA

Nearby chains