IL_1NJP_072

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

ACUUUG*CUGU

Length

10 nucleotides

Bulged bases

1NJP|1|0|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_072 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.3483

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

1NJP|1|0|A|1686
1NJP|1|0|C|1687
1NJP|1|0|U|1688
1NJP|1|0|U|1689
1NJP|1|0|U|1690
1NJP|1|0|G|1691
*
1NJP|1|0|C|1973
1NJP|1|0|U|1974
1NJP|1|0|G|1975
1NJP|1|0|U|1976

Current chains

Chain 0

23S ribosomal RNA

Nearby chains