IL_1NJP_077

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

1NJP|1|0|C|1830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_077 not in the Motif Atlas

Homologous match to IL_5J7L_314

Geometric discrepancy: 0.297

The information below is about IL_5J7L_314

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

1NJP|1|0|C|1829
1NJP|1|0|C|1830
1NJP|1|0|G|1831
1NJP|1|0|G|1832
*
1NJP|1|0|C|1885
1NJP|1|0|G|1886

Current chains

Chain 0

23S ribosomal RNA

Nearby chains