IL_1NJP_115

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

1NJP|1|0|U|2759, 1NJP|1|0|G|2760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_115 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.3407

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

1NJP|1|0|U|2615
1NJP|1|0|U|2616
1NJP|1|0|G|2617
1NJP|1|0|A|2618
1NJP|1|0|G|2619
*
1NJP|1|0|C|2754
1NJP|1|0|A|2755
1NJP|1|0|A|2756
1NJP|1|0|G|2757
1NJP|1|0|A|2758
1NJP|1|0|U|2759
1NJP|1|0|G|2760
1NJP|1|0|A|2761
1NJP|1|0|G|2762

Current chains

Chain 0

23S ribosomal RNA

Nearby chains