IL_1NJP_117

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_117 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.2977

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1NJP|1|0|C|2631
1NJP|1|0|U|2632
1NJP|1|0|A|2633
1NJP|1|0|G|2634
1NJP|1|0|U|2635
1NJP|1|0|A|2636
1NJP|1|0|C|2637
*
1NJP|1|0|G|2642
1NJP|1|0|G|2643
1NJP|1|0|A|2644
1NJP|1|0|C|2645
1NJP|1|0|C|2646
1NJP|1|0|G|2647

Current chains

Chain 0

23S ribosomal RNA

Nearby chains