IL_1NJP_130

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAUGG*UCUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_130 not in the Motif Atlas

Geometric match to IL_4QLM_002

Geometric discrepancy: 0.3957

The information below is about IL_4QLM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

1NJP|1|0|U|1431
1NJP|1|0|G|1432
1NJP|1|0|A|1433
1NJP|1|0|U|1434
1NJP|1|0|G|1435
1NJP|1|0|G|1436
*
1NJP|1|0|U|1592
1NJP|1|0|C|1593
1NJP|1|0|U|1594
1NJP|1|0|A|1595
1NJP|1|0|A|1596
1NJP|1|0|A|1597

Current chains

Chain 0

23S ribosomal RNA

Nearby chains