IL_1NKW_021

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUGA*UUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_021 not in the Motif Atlas

Geometric match to IL_4WF9_110

Geometric discrepancy: 0.2417

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

1NKW|1|0|A|706
1NKW|1|0|U|707
1NKW|1|0|G|708
1NKW|1|0|A|709
*
1NKW|1|0|U|779
1NKW|1|0|U|780
1NKW|1|0|G|781
1NKW|1|0|U|782

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2