IL_1NKW_043

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUCAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

1NKW|1|0|C|1031, 1NKW|1|0|C|1152, 1NKW|1|0|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_043 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.4071

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

1NKW|1|0|C|1029
1NKW|1|0|U|1030
1NKW|1|0|C|1031
1NKW|1|0|A|1032
1NKW|1|0|G|1033
1NKW|1|0|U|1034
1NKW|1|0|G|1035
*
1NKW|1|0|C|1150
1NKW|1|0|U|1151
1NKW|1|0|C|1152
1NKW|1|0|A|1153
1NKW|1|0|A|1154
1NKW|1|0|G|1155

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain H

50S ribosomal protein L13