IL_1NKW_044

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

1NKW|1|0|U|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_044 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.284

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

1NKW|1|0|G|1042
1NKW|1|0|A|1043
1NKW|1|0|U|1044
1NKW|1|0|G|1045
*
1NKW|1|0|C|1132
1NKW|1|0|G|1133
1NKW|1|0|C|1134

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain K

50S ribosomal protein L16