IL_1NKW_055

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_055 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.1567

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

1NKW|1|0|A|1275
1NKW|1|0|U|1276
1NKW|1|0|G|1277
1NKW|1|0|A|1278
1NKW|1|0|G|1279
1NKW|1|0|U|1280
1NKW|1|0|A|1281
1NKW|1|0|A|1282
*
1NKW|1|0|U|1994
1NKW|1|0|G|1995
1NKW|1|0|A|1996
1NKW|1|0|A|1997
1NKW|1|0|A|1998
1NKW|1|0|U|1999
1NKW|1|0|U|2000

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain Q

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32