IL_1NKW_079

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGC*GUGAA

Length

8 nucleotides

Bulged bases

1NKW|1|0|G|1882, 1NKW|1|0|A|1883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_079 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.327

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

1NKW|1|0|U|1833
1NKW|1|0|G|1834
1NKW|1|0|C|1835
*
1NKW|1|0|G|1880
1NKW|1|0|U|1881
1NKW|1|0|G|1882
1NKW|1|0|A|1883
1NKW|1|0|A|1884

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2