3D structure

PDB id
1NKW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAAG*CC
Length
6 nucleotides
Bulged bases
1NKW|1|0|A|1839, 1NKW|1|0|A|1840
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1NKW_080 not in the Motif Atlas
Homologous match to IL_7A0S_068
Geometric discrepancy: 0.3555
The information below is about IL_7A0S_068
Detailed Annotation
Major groove minor groove platform; mini C-loop
Broad Annotation
No text annotation
Motif group
IL_68140.4
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
18

Unit IDs

1NKW|1|0|G|1838
1NKW|1|0|A|1839
1NKW|1|0|A|1840
1NKW|1|0|G|1841
*
1NKW|1|0|C|1876
1NKW|1|0|C|1877

Current chains

Chain 0
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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