IL_1NKW_090

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUAG*CGGGU

Length

9 nucleotides

Bulged bases

1NKW|1|0|G|2217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_090 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.3407

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

1NKW|1|0|A|2063
1NKW|1|0|U|2064
1NKW|1|0|A|2065
1NKW|1|0|G|2066
*
1NKW|1|0|C|2215
1NKW|1|0|G|2216
1NKW|1|0|G|2217
1NKW|1|0|G|2218
1NKW|1|0|U|2219

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain Y

50S ribosomal protein L31