IL_1NKW_115

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

1NKW|1|0|A|2521

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_115 not in the Motif Atlas

Homologous match to IL_7RQB_099

Geometric discrepancy: 0.1444

The information below is about IL_7RQB_099

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.3

Basepair signature

cWW-tSH-cWW

Number of instances in this motif group

10

Unit IDs

1NKW|1|0|U|2501
1NKW|1|0|G|2502
*
1NKW|1|0|C|2519
1NKW|1|0|A|2520
1NKW|1|0|A|2521
1NKW|1|0|G|2522

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain H

50S ribosomal protein L13