IL_1NKW_124

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

1NKW|1|0|A|2745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_124 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.1509

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

1NKW|1|0|G|2717
1NKW|1|0|A|2718
1NKW|1|0|U|2719
1NKW|1|0|A|2720
1NKW|1|0|A|2721
1NKW|1|0|C|2722
*
1NKW|1|0|G|2742
1NKW|1|0|G|2743
1NKW|1|0|A|2744
1NKW|1|0|A|2745
1NKW|1|0|G|2746
1NKW|1|0|C|2747

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain H

50S ribosomal protein L13