IL_1NKW_126

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGC*GUGC

Length

7 nucleotides

Bulged bases

1NKW|1|0|G|2854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_126 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2909

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

1NKW|1|0|G|2813
1NKW|1|0|G|2814
1NKW|1|0|C|2815
*
1NKW|1|0|G|2852
1NKW|1|0|U|2853
1NKW|1|0|G|2854
1NKW|1|0|C|2855

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L17

Chain N

50S ribosomal protein L19