IL_1NKW_135
3D structure
- PDB id
- 1NKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAUGAUAC*GAAAAGUCG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1NKW_135 not in the Motif Atlas
- Geometric match to IL_364D_003
- Geometric discrepancy: 0.3485
- The information below is about IL_364D_003
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
1NKW|1|9|C|73
1NKW|1|9|A|74
1NKW|1|9|A|75
1NKW|1|9|U|76
1NKW|1|9|G|77
1NKW|1|9|A|78
1NKW|1|9|U|79
1NKW|1|9|A|80
1NKW|1|9|C|81
*
1NKW|1|9|G|100
1NKW|1|9|A|101
1NKW|1|9|A|102
1NKW|1|9|A|103
1NKW|1|9|A|104
1NKW|1|9|G|105
1NKW|1|9|U|106
1NKW|1|9|C|107
1NKW|1|9|G|108
Current chains
- Chain 9
- 5S ribosomal RNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- 50S ribosomal protein L16
- Chain T
- general stress protein CTC
Coloring options: