IL_1NKW_137
3D structure
- PDB id
- 1NKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 1NKW|1|0|U|1037, 1NKW|1|0|A|1138, 1NKW|1|0|U|1141
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1NKW_137 not in the Motif Atlas
- Homologous match to IL_9DFE_039
- Geometric discrepancy: 0.2795
- The information below is about IL_9DFE_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
1NKW|1|0|G|1035
1NKW|1|0|G|1036
1NKW|1|0|U|1037
1NKW|1|0|U|1038
1NKW|1|0|A|1039
1NKW|1|0|A|1040
1NKW|1|0|G|1041
*
1NKW|1|0|C|1135
1NKW|1|0|G|1136
1NKW|1|0|A|1137
1NKW|1|0|A|1138
1NKW|1|0|A|1139
1NKW|1|0|A|1140
1NKW|1|0|U|1141
1NKW|1|0|G|1142
1NKW|1|0|A|1143
1NKW|1|0|U|1144
1NKW|1|0|C|1145
1NKW|1|0|G|1146
1NKW|1|0|G|1147
1NKW|1|0|G|1148
1NKW|1|0|G|1149
1NKW|1|0|C|1150
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain B
- 50S ribosomal protein L3
- Chain H
- 50S ribosomal protein L13
- Chain K
- 50S ribosomal protein L16
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