IL_1NKW_166

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

1NKW|1|0|C|1792, 1NKW|1|0|C|1808, 1NKW|1|0|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_166 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.3451

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1NKW|1|0|U|1789
1NKW|1|0|G|1790
1NKW|1|0|C|1791
1NKW|1|0|C|1792
1NKW|1|0|A|1793
1NKW|1|0|A|1794
1NKW|1|0|C|1795
*
1NKW|1|0|G|1805
1NKW|1|0|G|1806
1NKW|1|0|A|1807
1NKW|1|0|C|1808
1NKW|1|0|G|1809
1NKW|1|0|U|1810
1NKW|1|0|A|1811
1NKW|1|0|U|1812
1NKW|1|0|A|1813

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2