IL_1NWY_031

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAG*CUCC

Length

7 nucleotides

Bulged bases

1NWY|1|0|C|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_031 not in the Motif Atlas

Geometric match to IL_4PKD_001

Geometric discrepancy: 0.2592

The information below is about IL_4PKD_001

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

1NWY|1|0|G|875
1NWY|1|0|A|876
1NWY|1|0|G|877
*
1NWY|1|0|C|924
1NWY|1|0|U|925
1NWY|1|0|C|926
1NWY|1|0|C|927

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain K

ribosomal protein L16

Chain U

ribosomal protein L27