IL_1NWY_032

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

1NWY|1|0|A|879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_032 not in the Motif Atlas

Homologous match to IL_7A0S_029

Geometric discrepancy: 0.3984

The information below is about IL_7A0S_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_16301.2

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

10

Unit IDs

1NWY|1|0|G|877
1NWY|1|0|C|878
1NWY|1|0|A|879
1NWY|1|0|C|880
1NWY|1|0|U|881
*
1NWY|1|0|A|921
1NWY|1|0|A|922
1NWY|1|0|A|923
1NWY|1|0|C|924

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain K

ribosomal protein L16