IL_1NWY_046

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

1NWY|1|0|G|1261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_046 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.367

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_37443.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

1NWY|1|0|C|1210
1NWY|1|0|G|1211
1NWY|1|0|U|1212
1NWY|1|0|U|1213
*
1NWY|1|0|A|1259
1NWY|1|0|A|1260
1NWY|1|0|G|1261
1NWY|1|0|U|1262
1NWY|1|0|G|1263

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain C

ribosomal protein L4

Chain J

ribosomal protein L15

Chain O

ribosomal protein L20