IL_1NWY_066

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_066 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.2676

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

1NWY|1|0|G|1668
1NWY|1|0|A|1669
1NWY|1|0|G|1670
1NWY|1|0|A|1671
1NWY|1|0|A|1672
1NWY|1|0|C|1673
*
1NWY|1|0|G|1987
1NWY|1|0|A|1988
1NWY|1|0|C|1989

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain B

ribosomal protein L3

Chain L

ribosomal protein L17