IL_1NWY_068

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_068 not in the Motif Atlas

Geometric match to IL_4V9F_008

Geometric discrepancy: 0.3382

The information below is about IL_4V9F_008

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

1NWY|1|0|G|1683
1NWY|1|0|G|1684
1NWY|1|0|A|1685
1NWY|1|0|A|1686
*
1NWY|1|0|U|1976
1NWY|1|0|C|1977

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain B

ribosomal protein L3

Chain I

ribosomal protein L14