IL_1NWY_070

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

1NWY|1|0|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_070 not in the Motif Atlas

Geometric match to IL_4WF9_066

Geometric discrepancy: 0.2535

The information below is about IL_4WF9_066

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

1NWY|1|0|C|1703
1NWY|1|0|G|1704
1NWY|1|0|U|1705
1NWY|1|0|A|1706
1NWY|1|0|A|1707
1NWY|1|0|C|1708
*
1NWY|1|0|G|1713
1NWY|1|0|A|1714
1NWY|1|0|A|1715
1NWY|1|0|G|1716
1NWY|1|0|A|1717
1NWY|1|0|A|1718
1NWY|1|0|G|1719

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain A

ribosomal protein L2