IL_1NWY_099

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_099 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.2212

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

1NWY|1|0|C|2329
1NWY|1|0|G|2330
1NWY|1|0|A|2331
1NWY|1|0|G|2332
*
1NWY|1|0|C|2343
1NWY|1|0|G|2344
1NWY|1|0|A|2345
1NWY|1|0|G|2346

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain 3

ribosomal protein L35

Chain M

ribosomal protein L18

Chain U

ribosomal protein L27