IL_1NWY_117

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGC*GUGC

Length

7 nucleotides

Bulged bases

1NWY|1|0|G|2854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_117 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2759

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

1NWY|1|0|G|2813
1NWY|1|0|G|2814
1NWY|1|0|C|2815
*
1NWY|1|0|G|2852
1NWY|1|0|U|2853
1NWY|1|0|G|2854
1NWY|1|0|C|2855

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain L

ribosomal protein L17

Chain N

ribosomal protein L19