IL_1NWY_128
3D structure
- PDB id
- 1NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUUAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 1NWY|1|0|U|1037, 1NWY|1|0|A|1138, 1NWY|1|0|U|1141
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1NWY_128 not in the Motif Atlas
- Geometric match to IL_7A0S_037
- Geometric discrepancy: 0.2446
- The information below is about IL_7A0S_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
1NWY|1|0|G|1035
1NWY|1|0|G|1036
1NWY|1|0|U|1037
1NWY|1|0|U|1038
1NWY|1|0|A|1039
1NWY|1|0|A|1040
1NWY|1|0|G|1041
*
1NWY|1|0|C|1135
1NWY|1|0|G|1136
1NWY|1|0|A|1137
1NWY|1|0|A|1138
1NWY|1|0|A|1139
1NWY|1|0|A|1140
1NWY|1|0|U|1141
1NWY|1|0|G|1142
1NWY|1|0|A|1143
1NWY|1|0|U|1144
1NWY|1|0|C|1145
1NWY|1|0|G|1146
1NWY|1|0|G|1147
1NWY|1|0|G|1148
1NWY|1|0|G|1149
1NWY|1|0|C|1150
Current chains
- Chain 0
- 23S RIBOSOMAL RRNA
Nearby chains
- Chain 4
- ribosomal protein L36
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain B
- ribosomal protein L3
- Chain H
- ribosomal protein L13
- Chain K
- ribosomal protein L16
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