IL_1NWY_142

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCGAGA*UCGGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_142 not in the Motif Atlas

Geometric match to IL_8C3A_028

Geometric discrepancy: 0.39

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1NWY|1|0|C|2445
1NWY|1|0|C|2446
1NWY|1|0|G|2447
1NWY|1|0|A|2448
1NWY|1|0|G|2449
1NWY|1|0|A|2450
*
1NWY|1|0|U|2458
1NWY|1|0|C|2459
1NWY|1|0|G|2460
1NWY|1|0|G|2461
1NWY|1|0|C|2462
1NWY|1|0|G|2463

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain 4

ribosomal protein L36

Chain K

ribosomal protein L16

Chain T

general stress protein Ctc