IL_1NZ1_001

3D structure

PDB id

1NZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the S. cerevisiae U6 Intramolecular stem-loop containing an SP phosphorothioate at nucleotide U80

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CCC*GA(SSU)G

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: SSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NZ1_001 not in the Motif Atlas

Geometric match to IL_4WSM_372

Geometric discrepancy: 0.3973

The information below is about IL_4WSM_372

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

1NZ1|1|A|C|5
1NZ1|1|A|C|6
1NZ1|1|A|C|7
*
1NZ1|1|A|G|17
1NZ1|1|A|A|18
1NZ1|1|A|SSU|19
1NZ1|1|A|G|20

Current chains

Chain A

SP U6 Intramolecular Stem-Loop RNA

Nearby chains